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- import sympy
- import tempfile
- import os
- from sympy.core.mod import Mod
- from sympy.core.relational import Eq
- from sympy.core.symbol import symbols
- from sympy.external import import_module
- from sympy.tensor import IndexedBase, Idx
- from sympy.utilities.autowrap import autowrap, ufuncify, CodeWrapError
- from sympy.testing.pytest import skip
- numpy = import_module('numpy', min_module_version='1.6.1')
- Cython = import_module('Cython', min_module_version='0.15.1')
- f2py = import_module('numpy.f2py', import_kwargs={'fromlist': ['f2py']})
- f2pyworks = False
- if f2py:
- try:
- autowrap(symbols('x'), 'f95', 'f2py')
- except (CodeWrapError, ImportError, OSError):
- f2pyworks = False
- else:
- f2pyworks = True
- a, b, c = symbols('a b c')
- n, m, d = symbols('n m d', integer=True)
- A, B, C = symbols('A B C', cls=IndexedBase)
- i = Idx('i', m)
- j = Idx('j', n)
- k = Idx('k', d)
- def has_module(module):
- """
- Return True if module exists, otherwise run skip().
- module should be a string.
- """
- # To give a string of the module name to skip(), this function takes a
- # string. So we don't waste time running import_module() more than once,
- # just map the three modules tested here in this dict.
- modnames = {'numpy': numpy, 'Cython': Cython, 'f2py': f2py}
- if modnames[module]:
- if module == 'f2py' and not f2pyworks:
- skip("Couldn't run f2py.")
- return True
- skip("Couldn't import %s." % module)
- #
- # test runners used by several language-backend combinations
- #
- def runtest_autowrap_twice(language, backend):
- f = autowrap((((a + b)/c)**5).expand(), language, backend)
- g = autowrap((((a + b)/c)**4).expand(), language, backend)
- # check that autowrap updates the module name. Else, g gives the same as f
- assert f(1, -2, 1) == -1.0
- assert g(1, -2, 1) == 1.0
- def runtest_autowrap_trace(language, backend):
- has_module('numpy')
- trace = autowrap(A[i, i], language, backend)
- assert trace(numpy.eye(100)) == 100
- def runtest_autowrap_matrix_vector(language, backend):
- has_module('numpy')
- x, y = symbols('x y', cls=IndexedBase)
- expr = Eq(y[i], A[i, j]*x[j])
- mv = autowrap(expr, language, backend)
- # compare with numpy's dot product
- M = numpy.random.rand(10, 20)
- x = numpy.random.rand(20)
- y = numpy.dot(M, x)
- assert numpy.sum(numpy.abs(y - mv(M, x))) < 1e-13
- def runtest_autowrap_matrix_matrix(language, backend):
- has_module('numpy')
- expr = Eq(C[i, j], A[i, k]*B[k, j])
- matmat = autowrap(expr, language, backend)
- # compare with numpy's dot product
- M1 = numpy.random.rand(10, 20)
- M2 = numpy.random.rand(20, 15)
- M3 = numpy.dot(M1, M2)
- assert numpy.sum(numpy.abs(M3 - matmat(M1, M2))) < 1e-13
- def runtest_ufuncify(language, backend):
- has_module('numpy')
- a, b, c = symbols('a b c')
- fabc = ufuncify([a, b, c], a*b + c, backend=backend)
- facb = ufuncify([a, c, b], a*b + c, backend=backend)
- grid = numpy.linspace(-2, 2, 50)
- b = numpy.linspace(-5, 4, 50)
- c = numpy.linspace(-1, 1, 50)
- expected = grid*b + c
- numpy.testing.assert_allclose(fabc(grid, b, c), expected)
- numpy.testing.assert_allclose(facb(grid, c, b), expected)
- def runtest_issue_10274(language, backend):
- expr = (a - b + c)**(13)
- tmp = tempfile.mkdtemp()
- f = autowrap(expr, language, backend, tempdir=tmp,
- helpers=('helper', a - b + c, (a, b, c)))
- assert f(1, 1, 1) == 1
- for file in os.listdir(tmp):
- if not (file.startswith("wrapped_code_") and file.endswith(".c")):
- continue
- with open(tmp + '/' + file) as fil:
- lines = fil.readlines()
- assert lines[0] == "/******************************************************************************\n"
- assert "Code generated with SymPy " + sympy.__version__ in lines[1]
- assert lines[2:] == [
- " * *\n",
- " * See http://www.sympy.org/ for more information. *\n",
- " * *\n",
- " * This file is part of 'autowrap' *\n",
- " ******************************************************************************/\n",
- "#include " + '"' + file[:-1]+ 'h"' + "\n",
- "#include <math.h>\n",
- "\n",
- "double helper(double a, double b, double c) {\n",
- "\n",
- " double helper_result;\n",
- " helper_result = a - b + c;\n",
- " return helper_result;\n",
- "\n",
- "}\n",
- "\n",
- "double autofunc(double a, double b, double c) {\n",
- "\n",
- " double autofunc_result;\n",
- " autofunc_result = pow(helper(a, b, c), 13);\n",
- " return autofunc_result;\n",
- "\n",
- "}\n",
- ]
- def runtest_issue_15337(language, backend):
- has_module('numpy')
- # NOTE : autowrap was originally designed to only accept an iterable for
- # the kwarg "helpers", but in issue 10274 the user mistakenly thought that
- # if there was only a single helper it did not need to be passed via an
- # iterable that wrapped the helper tuple. There were no tests for this
- # behavior so when the code was changed to accept a single tuple it broke
- # the original behavior. These tests below ensure that both now work.
- a, b, c, d, e = symbols('a, b, c, d, e')
- expr = (a - b + c - d + e)**13
- exp_res = (1. - 2. + 3. - 4. + 5.)**13
- f = autowrap(expr, language, backend, args=(a, b, c, d, e),
- helpers=('f1', a - b + c, (a, b, c)))
- numpy.testing.assert_allclose(f(1, 2, 3, 4, 5), exp_res)
- f = autowrap(expr, language, backend, args=(a, b, c, d, e),
- helpers=(('f1', a - b, (a, b)), ('f2', c - d, (c, d))))
- numpy.testing.assert_allclose(f(1, 2, 3, 4, 5), exp_res)
- def test_issue_15230():
- has_module('f2py')
- x, y = symbols('x, y')
- expr = Mod(x, 3.0) - Mod(y, -2.0)
- f = autowrap(expr, args=[x, y], language='F95')
- exp_res = float(expr.xreplace({x: 3.5, y: 2.7}).evalf())
- assert abs(f(3.5, 2.7) - exp_res) < 1e-14
- x, y = symbols('x, y', integer=True)
- expr = Mod(x, 3) - Mod(y, -2)
- f = autowrap(expr, args=[x, y], language='F95')
- assert f(3, 2) == expr.xreplace({x: 3, y: 2})
- #
- # tests of language-backend combinations
- #
- # f2py
- def test_wrap_twice_f95_f2py():
- has_module('f2py')
- runtest_autowrap_twice('f95', 'f2py')
- def test_autowrap_trace_f95_f2py():
- has_module('f2py')
- runtest_autowrap_trace('f95', 'f2py')
- def test_autowrap_matrix_vector_f95_f2py():
- has_module('f2py')
- runtest_autowrap_matrix_vector('f95', 'f2py')
- def test_autowrap_matrix_matrix_f95_f2py():
- has_module('f2py')
- runtest_autowrap_matrix_matrix('f95', 'f2py')
- def test_ufuncify_f95_f2py():
- has_module('f2py')
- runtest_ufuncify('f95', 'f2py')
- def test_issue_15337_f95_f2py():
- has_module('f2py')
- runtest_issue_15337('f95', 'f2py')
- # Cython
- def test_wrap_twice_c_cython():
- has_module('Cython')
- runtest_autowrap_twice('C', 'cython')
- def test_autowrap_trace_C_Cython():
- has_module('Cython')
- runtest_autowrap_trace('C99', 'cython')
- def test_autowrap_matrix_vector_C_cython():
- has_module('Cython')
- runtest_autowrap_matrix_vector('C99', 'cython')
- def test_autowrap_matrix_matrix_C_cython():
- has_module('Cython')
- runtest_autowrap_matrix_matrix('C99', 'cython')
- def test_ufuncify_C_Cython():
- has_module('Cython')
- runtest_ufuncify('C99', 'cython')
- def test_issue_10274_C_cython():
- has_module('Cython')
- runtest_issue_10274('C89', 'cython')
- def test_issue_15337_C_cython():
- has_module('Cython')
- runtest_issue_15337('C89', 'cython')
- def test_autowrap_custom_printer():
- has_module('Cython')
- from sympy.core.numbers import pi
- from sympy.utilities.codegen import C99CodeGen
- from sympy.printing.c import C99CodePrinter
- class PiPrinter(C99CodePrinter):
- def _print_Pi(self, expr):
- return "S_PI"
- printer = PiPrinter()
- gen = C99CodeGen(printer=printer)
- gen.preprocessor_statements.append('#include "shortpi.h"')
- expr = pi * a
- expected = (
- '#include "%s"\n'
- '#include <math.h>\n'
- '#include "shortpi.h"\n'
- '\n'
- 'double autofunc(double a) {\n'
- '\n'
- ' double autofunc_result;\n'
- ' autofunc_result = S_PI*a;\n'
- ' return autofunc_result;\n'
- '\n'
- '}\n'
- )
- tmpdir = tempfile.mkdtemp()
- # write a trivial header file to use in the generated code
- with open(os.path.join(tmpdir, 'shortpi.h'), 'w') as f:
- f.write('#define S_PI 3.14')
- func = autowrap(expr, backend='cython', tempdir=tmpdir, code_gen=gen)
- assert func(4.2) == 3.14 * 4.2
- # check that the generated code is correct
- for filename in os.listdir(tmpdir):
- if filename.startswith('wrapped_code') and filename.endswith('.c'):
- with open(os.path.join(tmpdir, filename)) as f:
- lines = f.readlines()
- expected = expected % filename.replace('.c', '.h')
- assert ''.join(lines[7:]) == expected
- # Numpy
- def test_ufuncify_numpy():
- # This test doesn't use Cython, but if Cython works, then there is a valid
- # C compiler, which is needed.
- has_module('Cython')
- runtest_ufuncify('C99', 'numpy')
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