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- """Tests for the linalg._isolve.lgmres module
- """
- from numpy.testing import (assert_, assert_allclose, assert_equal,
- suppress_warnings)
- import pytest
- from platform import python_implementation
- import numpy as np
- from numpy import zeros, array, allclose
- from scipy.linalg import norm
- from scipy.sparse import csr_matrix, eye, rand
- from scipy.sparse.linalg._interface import LinearOperator
- from scipy.sparse.linalg import splu
- from scipy.sparse.linalg._isolve import lgmres, gmres
- Am = csr_matrix(array([[-2, 1, 0, 0, 0, 9],
- [1, -2, 1, 0, 5, 0],
- [0, 1, -2, 1, 0, 0],
- [0, 0, 1, -2, 1, 0],
- [0, 3, 0, 1, -2, 1],
- [1, 0, 0, 0, 1, -2]]))
- b = array([1, 2, 3, 4, 5, 6])
- count = [0]
- def matvec(v):
- count[0] += 1
- return Am@v
- A = LinearOperator(matvec=matvec, shape=Am.shape, dtype=Am.dtype)
- def do_solve(**kw):
- count[0] = 0
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- x0, flag = lgmres(A, b, x0=zeros(A.shape[0]),
- inner_m=6, tol=1e-14, **kw)
- count_0 = count[0]
- assert_(allclose(A@x0, b, rtol=1e-12, atol=1e-12), norm(A@x0-b))
- return x0, count_0
- class TestLGMRES:
- def test_preconditioner(self):
- # Check that preconditioning works
- pc = splu(Am.tocsc())
- M = LinearOperator(matvec=pc.solve, shape=A.shape, dtype=A.dtype)
- x0, count_0 = do_solve()
- x1, count_1 = do_solve(M=M)
- assert_(count_1 == 3)
- assert_(count_1 < count_0/2)
- assert_(allclose(x1, x0, rtol=1e-14))
- def test_outer_v(self):
- # Check that the augmentation vectors behave as expected
- outer_v = []
- x0, count_0 = do_solve(outer_k=6, outer_v=outer_v)
- assert_(len(outer_v) > 0)
- assert_(len(outer_v) <= 6)
- x1, count_1 = do_solve(outer_k=6, outer_v=outer_v,
- prepend_outer_v=True)
- assert_(count_1 == 2, count_1)
- assert_(count_1 < count_0/2)
- assert_(allclose(x1, x0, rtol=1e-14))
- # ---
- outer_v = []
- x0, count_0 = do_solve(outer_k=6, outer_v=outer_v,
- store_outer_Av=False)
- assert_(array([v[1] is None for v in outer_v]).all())
- assert_(len(outer_v) > 0)
- assert_(len(outer_v) <= 6)
- x1, count_1 = do_solve(outer_k=6, outer_v=outer_v,
- prepend_outer_v=True)
- assert_(count_1 == 3, count_1)
- assert_(count_1 < count_0/2)
- assert_(allclose(x1, x0, rtol=1e-14))
- @pytest.mark.skipif(python_implementation() == 'PyPy',
- reason="Fails on PyPy CI runs. See #9507")
- def test_arnoldi(self):
- np.random.seed(1234)
- A = eye(2000) + rand(2000, 2000, density=5e-4)
- b = np.random.rand(2000)
- # The inner arnoldi should be equivalent to gmres
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- x0, flag0 = lgmres(A, b, x0=zeros(A.shape[0]),
- inner_m=15, maxiter=1)
- x1, flag1 = gmres(A, b, x0=zeros(A.shape[0]),
- restart=15, maxiter=1)
- assert_equal(flag0, 1)
- assert_equal(flag1, 1)
- norm = np.linalg.norm(A.dot(x0) - b)
- assert_(norm > 1e-4)
- assert_allclose(x0, x1)
- def test_cornercase(self):
- np.random.seed(1234)
- # Rounding error may prevent convergence with tol=0 --- ensure
- # that the return values in this case are correct, and no
- # exceptions are raised
- for n in [3, 5, 10, 100]:
- A = 2*eye(n)
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- b = np.ones(n)
- x, info = lgmres(A, b, maxiter=10)
- assert_equal(info, 0)
- assert_allclose(A.dot(x) - b, 0, atol=1e-14)
- x, info = lgmres(A, b, tol=0, maxiter=10)
- if info == 0:
- assert_allclose(A.dot(x) - b, 0, atol=1e-14)
- b = np.random.rand(n)
- x, info = lgmres(A, b, maxiter=10)
- assert_equal(info, 0)
- assert_allclose(A.dot(x) - b, 0, atol=1e-14)
- x, info = lgmres(A, b, tol=0, maxiter=10)
- if info == 0:
- assert_allclose(A.dot(x) - b, 0, atol=1e-14)
- def test_nans(self):
- A = eye(3, format='lil')
- A[1, 1] = np.nan
- b = np.ones(3)
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- x, info = lgmres(A, b, tol=0, maxiter=10)
- assert_equal(info, 1)
- def test_breakdown_with_outer_v(self):
- A = np.array([[1, 2], [3, 4]], dtype=float)
- b = np.array([1, 2])
- x = np.linalg.solve(A, b)
- v0 = np.array([1, 0])
- # The inner iteration should converge to the correct solution,
- # since it's in the outer vector list
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- xp, info = lgmres(A, b, outer_v=[(v0, None), (x, None)], maxiter=1)
- assert_allclose(xp, x, atol=1e-12)
- def test_breakdown_underdetermined(self):
- # Should find LSQ solution in the Krylov span in one inner
- # iteration, despite solver breakdown from nilpotent A.
- A = np.array([[0, 1, 1, 1],
- [0, 0, 1, 1],
- [0, 0, 0, 1],
- [0, 0, 0, 0]], dtype=float)
- bs = [
- np.array([1, 1, 1, 1]),
- np.array([1, 1, 1, 0]),
- np.array([1, 1, 0, 0]),
- np.array([1, 0, 0, 0]),
- ]
- for b in bs:
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- xp, info = lgmres(A, b, maxiter=1)
- resp = np.linalg.norm(A.dot(xp) - b)
- K = np.c_[b, A.dot(b), A.dot(A.dot(b)), A.dot(A.dot(A.dot(b)))]
- y, _, _, _ = np.linalg.lstsq(A.dot(K), b, rcond=-1)
- x = K.dot(y)
- res = np.linalg.norm(A.dot(x) - b)
- assert_allclose(resp, res, err_msg=repr(b))
- def test_denormals(self):
- # Check that no warnings are emitted if the matrix contains
- # numbers for which 1/x has no float representation, and that
- # the solver behaves properly.
- A = np.array([[1, 2], [3, 4]], dtype=float)
- A *= 100 * np.nextafter(0, 1)
- b = np.array([1, 1])
- with suppress_warnings() as sup:
- sup.filter(DeprecationWarning, ".*called without specifying.*")
- xp, info = lgmres(A, b)
- if info == 0:
- assert_allclose(A.dot(xp), b)
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