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- import time
- from datetime import date
- import numpy as np
- from numpy.testing import (
- assert_, assert_equal, assert_allclose, assert_raises,
- )
- from numpy.lib._iotools import (
- LineSplitter, NameValidator, StringConverter,
- has_nested_fields, easy_dtype, flatten_dtype
- )
- class TestLineSplitter:
- "Tests the LineSplitter class."
- def test_no_delimiter(self):
- "Test LineSplitter w/o delimiter"
- strg = " 1 2 3 4 5 # test"
- test = LineSplitter()(strg)
- assert_equal(test, ['1', '2', '3', '4', '5'])
- test = LineSplitter('')(strg)
- assert_equal(test, ['1', '2', '3', '4', '5'])
- def test_space_delimiter(self):
- "Test space delimiter"
- strg = " 1 2 3 4 5 # test"
- test = LineSplitter(' ')(strg)
- assert_equal(test, ['1', '2', '3', '4', '', '5'])
- test = LineSplitter(' ')(strg)
- assert_equal(test, ['1 2 3 4', '5'])
- def test_tab_delimiter(self):
- "Test tab delimiter"
- strg = " 1\t 2\t 3\t 4\t 5 6"
- test = LineSplitter('\t')(strg)
- assert_equal(test, ['1', '2', '3', '4', '5 6'])
- strg = " 1 2\t 3 4\t 5 6"
- test = LineSplitter('\t')(strg)
- assert_equal(test, ['1 2', '3 4', '5 6'])
- def test_other_delimiter(self):
- "Test LineSplitter on delimiter"
- strg = "1,2,3,4,,5"
- test = LineSplitter(',')(strg)
- assert_equal(test, ['1', '2', '3', '4', '', '5'])
- #
- strg = " 1,2,3,4,,5 # test"
- test = LineSplitter(',')(strg)
- assert_equal(test, ['1', '2', '3', '4', '', '5'])
- # gh-11028 bytes comment/delimiters should get encoded
- strg = b" 1,2,3,4,,5 % test"
- test = LineSplitter(delimiter=b',', comments=b'%')(strg)
- assert_equal(test, ['1', '2', '3', '4', '', '5'])
- def test_constant_fixed_width(self):
- "Test LineSplitter w/ fixed-width fields"
- strg = " 1 2 3 4 5 # test"
- test = LineSplitter(3)(strg)
- assert_equal(test, ['1', '2', '3', '4', '', '5', ''])
- #
- strg = " 1 3 4 5 6# test"
- test = LineSplitter(20)(strg)
- assert_equal(test, ['1 3 4 5 6'])
- #
- strg = " 1 3 4 5 6# test"
- test = LineSplitter(30)(strg)
- assert_equal(test, ['1 3 4 5 6'])
- def test_variable_fixed_width(self):
- strg = " 1 3 4 5 6# test"
- test = LineSplitter((3, 6, 6, 3))(strg)
- assert_equal(test, ['1', '3', '4 5', '6'])
- #
- strg = " 1 3 4 5 6# test"
- test = LineSplitter((6, 6, 9))(strg)
- assert_equal(test, ['1', '3 4', '5 6'])
- # -----------------------------------------------------------------------------
- class TestNameValidator:
- def test_case_sensitivity(self):
- "Test case sensitivity"
- names = ['A', 'a', 'b', 'c']
- test = NameValidator().validate(names)
- assert_equal(test, ['A', 'a', 'b', 'c'])
- test = NameValidator(case_sensitive=False).validate(names)
- assert_equal(test, ['A', 'A_1', 'B', 'C'])
- test = NameValidator(case_sensitive='upper').validate(names)
- assert_equal(test, ['A', 'A_1', 'B', 'C'])
- test = NameValidator(case_sensitive='lower').validate(names)
- assert_equal(test, ['a', 'a_1', 'b', 'c'])
- # check exceptions
- assert_raises(ValueError, NameValidator, case_sensitive='foobar')
- def test_excludelist(self):
- "Test excludelist"
- names = ['dates', 'data', 'Other Data', 'mask']
- validator = NameValidator(excludelist=['dates', 'data', 'mask'])
- test = validator.validate(names)
- assert_equal(test, ['dates_', 'data_', 'Other_Data', 'mask_'])
- def test_missing_names(self):
- "Test validate missing names"
- namelist = ('a', 'b', 'c')
- validator = NameValidator()
- assert_equal(validator(namelist), ['a', 'b', 'c'])
- namelist = ('', 'b', 'c')
- assert_equal(validator(namelist), ['f0', 'b', 'c'])
- namelist = ('a', 'b', '')
- assert_equal(validator(namelist), ['a', 'b', 'f0'])
- namelist = ('', 'f0', '')
- assert_equal(validator(namelist), ['f1', 'f0', 'f2'])
- def test_validate_nb_names(self):
- "Test validate nb names"
- namelist = ('a', 'b', 'c')
- validator = NameValidator()
- assert_equal(validator(namelist, nbfields=1), ('a',))
- assert_equal(validator(namelist, nbfields=5, defaultfmt="g%i"),
- ['a', 'b', 'c', 'g0', 'g1'])
- def test_validate_wo_names(self):
- "Test validate no names"
- namelist = None
- validator = NameValidator()
- assert_(validator(namelist) is None)
- assert_equal(validator(namelist, nbfields=3), ['f0', 'f1', 'f2'])
- # -----------------------------------------------------------------------------
- def _bytes_to_date(s):
- return date(*time.strptime(s, "%Y-%m-%d")[:3])
- class TestStringConverter:
- "Test StringConverter"
- def test_creation(self):
- "Test creation of a StringConverter"
- converter = StringConverter(int, -99999)
- assert_equal(converter._status, 1)
- assert_equal(converter.default, -99999)
- def test_upgrade(self):
- "Tests the upgrade method."
- converter = StringConverter()
- assert_equal(converter._status, 0)
- # test int
- assert_equal(converter.upgrade('0'), 0)
- assert_equal(converter._status, 1)
- # On systems where long defaults to 32-bit, the statuses will be
- # offset by one, so we check for this here.
- import numpy.core.numeric as nx
- status_offset = int(nx.dtype(nx.int_).itemsize < nx.dtype(nx.int64).itemsize)
- # test int > 2**32
- assert_equal(converter.upgrade('17179869184'), 17179869184)
- assert_equal(converter._status, 1 + status_offset)
- # test float
- assert_allclose(converter.upgrade('0.'), 0.0)
- assert_equal(converter._status, 2 + status_offset)
- # test complex
- assert_equal(converter.upgrade('0j'), complex('0j'))
- assert_equal(converter._status, 3 + status_offset)
- # test str
- # note that the longdouble type has been skipped, so the
- # _status increases by 2. Everything should succeed with
- # unicode conversion (8).
- for s in ['a', b'a']:
- res = converter.upgrade(s)
- assert_(type(res) is str)
- assert_equal(res, 'a')
- assert_equal(converter._status, 8 + status_offset)
- def test_missing(self):
- "Tests the use of missing values."
- converter = StringConverter(missing_values=('missing',
- 'missed'))
- converter.upgrade('0')
- assert_equal(converter('0'), 0)
- assert_equal(converter(''), converter.default)
- assert_equal(converter('missing'), converter.default)
- assert_equal(converter('missed'), converter.default)
- try:
- converter('miss')
- except ValueError:
- pass
- def test_upgrademapper(self):
- "Tests updatemapper"
- dateparser = _bytes_to_date
- _original_mapper = StringConverter._mapper[:]
- try:
- StringConverter.upgrade_mapper(dateparser, date(2000, 1, 1))
- convert = StringConverter(dateparser, date(2000, 1, 1))
- test = convert('2001-01-01')
- assert_equal(test, date(2001, 1, 1))
- test = convert('2009-01-01')
- assert_equal(test, date(2009, 1, 1))
- test = convert('')
- assert_equal(test, date(2000, 1, 1))
- finally:
- StringConverter._mapper = _original_mapper
- def test_string_to_object(self):
- "Make sure that string-to-object functions are properly recognized"
- old_mapper = StringConverter._mapper[:] # copy of list
- conv = StringConverter(_bytes_to_date)
- assert_equal(conv._mapper, old_mapper)
- assert_(hasattr(conv, 'default'))
- def test_keep_default(self):
- "Make sure we don't lose an explicit default"
- converter = StringConverter(None, missing_values='',
- default=-999)
- converter.upgrade('3.14159265')
- assert_equal(converter.default, -999)
- assert_equal(converter.type, np.dtype(float))
- #
- converter = StringConverter(
- None, missing_values='', default=0)
- converter.upgrade('3.14159265')
- assert_equal(converter.default, 0)
- assert_equal(converter.type, np.dtype(float))
- def test_keep_default_zero(self):
- "Check that we don't lose a default of 0"
- converter = StringConverter(int, default=0,
- missing_values="N/A")
- assert_equal(converter.default, 0)
- def test_keep_missing_values(self):
- "Check that we're not losing missing values"
- converter = StringConverter(int, default=0,
- missing_values="N/A")
- assert_equal(
- converter.missing_values, {'', 'N/A'})
- def test_int64_dtype(self):
- "Check that int64 integer types can be specified"
- converter = StringConverter(np.int64, default=0)
- val = "-9223372036854775807"
- assert_(converter(val) == -9223372036854775807)
- val = "9223372036854775807"
- assert_(converter(val) == 9223372036854775807)
- def test_uint64_dtype(self):
- "Check that uint64 integer types can be specified"
- converter = StringConverter(np.uint64, default=0)
- val = "9223372043271415339"
- assert_(converter(val) == 9223372043271415339)
- class TestMiscFunctions:
- def test_has_nested_dtype(self):
- "Test has_nested_dtype"
- ndtype = np.dtype(float)
- assert_equal(has_nested_fields(ndtype), False)
- ndtype = np.dtype([('A', '|S3'), ('B', float)])
- assert_equal(has_nested_fields(ndtype), False)
- ndtype = np.dtype([('A', int), ('B', [('BA', float), ('BB', '|S1')])])
- assert_equal(has_nested_fields(ndtype), True)
- def test_easy_dtype(self):
- "Test ndtype on dtypes"
- # Simple case
- ndtype = float
- assert_equal(easy_dtype(ndtype), np.dtype(float))
- # As string w/o names
- ndtype = "i4, f8"
- assert_equal(easy_dtype(ndtype),
- np.dtype([('f0', "i4"), ('f1', "f8")]))
- # As string w/o names but different default format
- assert_equal(easy_dtype(ndtype, defaultfmt="field_%03i"),
- np.dtype([('field_000', "i4"), ('field_001', "f8")]))
- # As string w/ names
- ndtype = "i4, f8"
- assert_equal(easy_dtype(ndtype, names="a, b"),
- np.dtype([('a', "i4"), ('b', "f8")]))
- # As string w/ names (too many)
- ndtype = "i4, f8"
- assert_equal(easy_dtype(ndtype, names="a, b, c"),
- np.dtype([('a', "i4"), ('b', "f8")]))
- # As string w/ names (not enough)
- ndtype = "i4, f8"
- assert_equal(easy_dtype(ndtype, names=", b"),
- np.dtype([('f0', "i4"), ('b', "f8")]))
- # ... (with different default format)
- assert_equal(easy_dtype(ndtype, names="a", defaultfmt="f%02i"),
- np.dtype([('a', "i4"), ('f00', "f8")]))
- # As list of tuples w/o names
- ndtype = [('A', int), ('B', float)]
- assert_equal(easy_dtype(ndtype), np.dtype([('A', int), ('B', float)]))
- # As list of tuples w/ names
- assert_equal(easy_dtype(ndtype, names="a,b"),
- np.dtype([('a', int), ('b', float)]))
- # As list of tuples w/ not enough names
- assert_equal(easy_dtype(ndtype, names="a"),
- np.dtype([('a', int), ('f0', float)]))
- # As list of tuples w/ too many names
- assert_equal(easy_dtype(ndtype, names="a,b,c"),
- np.dtype([('a', int), ('b', float)]))
- # As list of types w/o names
- ndtype = (int, float, float)
- assert_equal(easy_dtype(ndtype),
- np.dtype([('f0', int), ('f1', float), ('f2', float)]))
- # As list of types w names
- ndtype = (int, float, float)
- assert_equal(easy_dtype(ndtype, names="a, b, c"),
- np.dtype([('a', int), ('b', float), ('c', float)]))
- # As simple dtype w/ names
- ndtype = np.dtype(float)
- assert_equal(easy_dtype(ndtype, names="a, b, c"),
- np.dtype([(_, float) for _ in ('a', 'b', 'c')]))
- # As simple dtype w/o names (but multiple fields)
- ndtype = np.dtype(float)
- assert_equal(
- easy_dtype(ndtype, names=['', '', ''], defaultfmt="f%02i"),
- np.dtype([(_, float) for _ in ('f00', 'f01', 'f02')]))
- def test_flatten_dtype(self):
- "Testing flatten_dtype"
- # Standard dtype
- dt = np.dtype([("a", "f8"), ("b", "f8")])
- dt_flat = flatten_dtype(dt)
- assert_equal(dt_flat, [float, float])
- # Recursive dtype
- dt = np.dtype([("a", [("aa", '|S1'), ("ab", '|S2')]), ("b", int)])
- dt_flat = flatten_dtype(dt)
- assert_equal(dt_flat, [np.dtype('|S1'), np.dtype('|S2'), int])
- # dtype with shaped fields
- dt = np.dtype([("a", (float, 2)), ("b", (int, 3))])
- dt_flat = flatten_dtype(dt)
- assert_equal(dt_flat, [float, int])
- dt_flat = flatten_dtype(dt, True)
- assert_equal(dt_flat, [float] * 2 + [int] * 3)
- # dtype w/ titles
- dt = np.dtype([(("a", "A"), "f8"), (("b", "B"), "f8")])
- dt_flat = flatten_dtype(dt)
- assert_equal(dt_flat, [float, float])
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