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- """
- Testing
- =======
- General guidelines for writing good tests:
- - doctests always assume ``import networkx as nx`` so don't add that
- - prefer pytest fixtures over classes with setup methods.
- - use the ``@pytest.mark.parametrize`` decorator
- - use ``pytest.importorskip`` for numpy, scipy, pandas, and matplotlib b/c of PyPy.
- and add the module to the relevant entries below.
- """
- import sys
- import warnings
- import pytest
- import networkx
- def pytest_addoption(parser):
- parser.addoption(
- "--runslow", action="store_true", default=False, help="run slow tests"
- )
- def pytest_configure(config):
- config.addinivalue_line("markers", "slow: mark test as slow to run")
- def pytest_collection_modifyitems(config, items):
- # Allow pluggable backends to add markers to tests when
- # running in auto-conversion test mode
- networkx.classes.backends._mark_tests(items)
- if config.getoption("--runslow"):
- # --runslow given in cli: do not skip slow tests
- return
- skip_slow = pytest.mark.skip(reason="need --runslow option to run")
- for item in items:
- if "slow" in item.keywords:
- item.add_marker(skip_slow)
- # TODO: The warnings below need to be dealt with, but for now we silence them.
- @pytest.fixture(autouse=True)
- def set_warnings():
- warnings.filterwarnings(
- "ignore",
- category=DeprecationWarning,
- message="literal_stringizer is deprecated",
- )
- warnings.filterwarnings(
- "ignore",
- category=DeprecationWarning,
- message="literal_destringizer is deprecated",
- )
- # create_using for scale_free_graph
- warnings.filterwarnings(
- "ignore", category=DeprecationWarning, message="The create_using argument"
- )
- warnings.filterwarnings(
- "ignore", category=DeprecationWarning, message="nx.nx_pydot"
- )
- warnings.filterwarnings(
- "ignore",
- category=DeprecationWarning,
- message="\n\nThe `attrs` keyword argument of node_link",
- )
- warnings.filterwarnings(
- "ignore",
- category=DeprecationWarning,
- message="single_target_shortest_path_length will",
- )
- warnings.filterwarnings(
- "ignore",
- category=DeprecationWarning,
- message="shortest_path for all_pairs",
- )
- warnings.filterwarnings(
- "ignore", category=DeprecationWarning, message="\nforest_str is deprecated"
- )
- @pytest.fixture(autouse=True)
- def add_nx(doctest_namespace):
- doctest_namespace["nx"] = networkx
- # What dependencies are installed?
- try:
- import numpy
- has_numpy = True
- except ImportError:
- has_numpy = False
- try:
- import scipy
- has_scipy = True
- except ImportError:
- has_scipy = False
- try:
- import matplotlib
- has_matplotlib = True
- except ImportError:
- has_matplotlib = False
- try:
- import pandas
- has_pandas = True
- except ImportError:
- has_pandas = False
- try:
- import pygraphviz
- has_pygraphviz = True
- except ImportError:
- has_pygraphviz = False
- try:
- import pydot
- has_pydot = True
- except ImportError:
- has_pydot = False
- try:
- import sympy
- has_sympy = True
- except ImportError:
- has_sympy = False
- # List of files that pytest should ignore
- collect_ignore = []
- needs_numpy = [
- "algorithms/approximation/traveling_salesman.py",
- "algorithms/centrality/current_flow_closeness.py",
- "algorithms/node_classification.py",
- "algorithms/non_randomness.py",
- "algorithms/shortest_paths/dense.py",
- "linalg/bethehessianmatrix.py",
- "linalg/laplacianmatrix.py",
- "utils/misc.py",
- "algorithms/centrality/laplacian.py",
- ]
- needs_scipy = [
- "algorithms/approximation/traveling_salesman.py",
- "algorithms/assortativity/correlation.py",
- "algorithms/assortativity/mixing.py",
- "algorithms/assortativity/pairs.py",
- "algorithms/bipartite/matrix.py",
- "algorithms/bipartite/spectral.py",
- "algorithms/centrality/current_flow_betweenness.py",
- "algorithms/centrality/current_flow_betweenness_subset.py",
- "algorithms/centrality/eigenvector.py",
- "algorithms/centrality/katz.py",
- "algorithms/centrality/second_order.py",
- "algorithms/centrality/subgraph_alg.py",
- "algorithms/communicability_alg.py",
- "algorithms/link_analysis/hits_alg.py",
- "algorithms/link_analysis/pagerank_alg.py",
- "algorithms/node_classification.py",
- "algorithms/similarity.py",
- "convert_matrix.py",
- "drawing/layout.py",
- "generators/spectral_graph_forge.py",
- "linalg/algebraicconnectivity.py",
- "linalg/attrmatrix.py",
- "linalg/bethehessianmatrix.py",
- "linalg/graphmatrix.py",
- "linalg/modularitymatrix.py",
- "linalg/spectrum.py",
- "utils/rcm.py",
- "algorithms/centrality/laplacian.py",
- ]
- needs_matplotlib = ["drawing/nx_pylab.py"]
- needs_pandas = ["convert_matrix.py"]
- needs_pygraphviz = ["drawing/nx_agraph.py"]
- needs_pydot = ["drawing/nx_pydot.py"]
- needs_sympy = ["algorithms/polynomials.py"]
- if not has_numpy:
- collect_ignore += needs_numpy
- if not has_scipy:
- collect_ignore += needs_scipy
- if not has_matplotlib:
- collect_ignore += needs_matplotlib
- if not has_pandas:
- collect_ignore += needs_pandas
- if not has_pygraphviz:
- collect_ignore += needs_pygraphviz
- if not has_pydot:
- collect_ignore += needs_pydot
- if not has_sympy:
- collect_ignore += needs_sympy
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