123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209 |
- from itertools import permutations
- import numpy as np
- import pytest
- from pandas._libs.interval import IntervalTree
- from pandas.compat import IS64
- import pandas._testing as tm
- def skipif_32bit(param):
- """
- Skip parameters in a parametrize on 32bit systems. Specifically used
- here to skip leaf_size parameters related to GH 23440.
- """
- marks = pytest.mark.skipif(not IS64, reason="GH 23440: int type mismatch on 32bit")
- return pytest.param(param, marks=marks)
- @pytest.fixture(params=["int64", "float64", "uint64"])
- def dtype(request):
- return request.param
- @pytest.fixture(params=[skipif_32bit(1), skipif_32bit(2), 10])
- def leaf_size(request):
- """
- Fixture to specify IntervalTree leaf_size parameter; to be used with the
- tree fixture.
- """
- return request.param
- @pytest.fixture(
- params=[
- np.arange(5, dtype="int64"),
- np.arange(5, dtype="uint64"),
- np.arange(5, dtype="float64"),
- np.array([0, 1, 2, 3, 4, np.nan], dtype="float64"),
- ]
- )
- def tree(request, leaf_size):
- left = request.param
- return IntervalTree(left, left + 2, leaf_size=leaf_size)
- class TestIntervalTree:
- def test_get_indexer(self, tree):
- result = tree.get_indexer(np.array([1.0, 5.5, 6.5]))
- expected = np.array([0, 4, -1], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- with pytest.raises(
- KeyError, match="'indexer does not intersect a unique set of intervals'"
- ):
- tree.get_indexer(np.array([3.0]))
- @pytest.mark.parametrize(
- "dtype, target_value, target_dtype",
- [("int64", 2**63 + 1, "uint64"), ("uint64", -1, "int64")],
- )
- def test_get_indexer_overflow(self, dtype, target_value, target_dtype):
- left, right = np.array([0, 1], dtype=dtype), np.array([1, 2], dtype=dtype)
- tree = IntervalTree(left, right)
- result = tree.get_indexer(np.array([target_value], dtype=target_dtype))
- expected = np.array([-1], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- def test_get_indexer_non_unique(self, tree):
- indexer, missing = tree.get_indexer_non_unique(np.array([1.0, 2.0, 6.5]))
- result = indexer[:1]
- expected = np.array([0], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- result = np.sort(indexer[1:3])
- expected = np.array([0, 1], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- result = np.sort(indexer[3:])
- expected = np.array([-1], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- result = missing
- expected = np.array([2], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- @pytest.mark.parametrize(
- "dtype, target_value, target_dtype",
- [("int64", 2**63 + 1, "uint64"), ("uint64", -1, "int64")],
- )
- def test_get_indexer_non_unique_overflow(self, dtype, target_value, target_dtype):
- left, right = np.array([0, 2], dtype=dtype), np.array([1, 3], dtype=dtype)
- tree = IntervalTree(left, right)
- target = np.array([target_value], dtype=target_dtype)
- result_indexer, result_missing = tree.get_indexer_non_unique(target)
- expected_indexer = np.array([-1], dtype="intp")
- tm.assert_numpy_array_equal(result_indexer, expected_indexer)
- expected_missing = np.array([0], dtype="intp")
- tm.assert_numpy_array_equal(result_missing, expected_missing)
- def test_duplicates(self, dtype):
- left = np.array([0, 0, 0], dtype=dtype)
- tree = IntervalTree(left, left + 1)
- with pytest.raises(
- KeyError, match="'indexer does not intersect a unique set of intervals'"
- ):
- tree.get_indexer(np.array([0.5]))
- indexer, missing = tree.get_indexer_non_unique(np.array([0.5]))
- result = np.sort(indexer)
- expected = np.array([0, 1, 2], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- result = missing
- expected = np.array([], dtype="intp")
- tm.assert_numpy_array_equal(result, expected)
- @pytest.mark.parametrize(
- "leaf_size", [skipif_32bit(1), skipif_32bit(10), skipif_32bit(100), 10000]
- )
- def test_get_indexer_closed(self, closed, leaf_size):
- x = np.arange(1000, dtype="float64")
- found = x.astype("intp")
- not_found = (-1 * np.ones(1000)).astype("intp")
- tree = IntervalTree(x, x + 0.5, closed=closed, leaf_size=leaf_size)
- tm.assert_numpy_array_equal(found, tree.get_indexer(x + 0.25))
- expected = found if tree.closed_left else not_found
- tm.assert_numpy_array_equal(expected, tree.get_indexer(x + 0.0))
- expected = found if tree.closed_right else not_found
- tm.assert_numpy_array_equal(expected, tree.get_indexer(x + 0.5))
- @pytest.mark.parametrize(
- "left, right, expected",
- [
- (np.array([0, 1, 4], dtype="int64"), np.array([2, 3, 5]), True),
- (np.array([0, 1, 2], dtype="int64"), np.array([5, 4, 3]), True),
- (np.array([0, 1, np.nan]), np.array([5, 4, np.nan]), True),
- (np.array([0, 2, 4], dtype="int64"), np.array([1, 3, 5]), False),
- (np.array([0, 2, np.nan]), np.array([1, 3, np.nan]), False),
- ],
- )
- @pytest.mark.parametrize("order", (list(x) for x in permutations(range(3))))
- def test_is_overlapping(self, closed, order, left, right, expected):
- # GH 23309
- tree = IntervalTree(left[order], right[order], closed=closed)
- result = tree.is_overlapping
- assert result is expected
- @pytest.mark.parametrize("order", (list(x) for x in permutations(range(3))))
- def test_is_overlapping_endpoints(self, closed, order):
- """shared endpoints are marked as overlapping"""
- # GH 23309
- left, right = np.arange(3, dtype="int64"), np.arange(1, 4)
- tree = IntervalTree(left[order], right[order], closed=closed)
- result = tree.is_overlapping
- expected = closed == "both"
- assert result is expected
- @pytest.mark.parametrize(
- "left, right",
- [
- (np.array([], dtype="int64"), np.array([], dtype="int64")),
- (np.array([0], dtype="int64"), np.array([1], dtype="int64")),
- (np.array([np.nan]), np.array([np.nan])),
- (np.array([np.nan] * 3), np.array([np.nan] * 3)),
- ],
- )
- def test_is_overlapping_trivial(self, closed, left, right):
- # GH 23309
- tree = IntervalTree(left, right, closed=closed)
- assert tree.is_overlapping is False
- @pytest.mark.skipif(not IS64, reason="GH 23440")
- def test_construction_overflow(self):
- # GH 25485
- left, right = np.arange(101, dtype="int64"), [np.iinfo(np.int64).max] * 101
- tree = IntervalTree(left, right)
- # pivot should be average of left/right medians
- result = tree.root.pivot
- expected = (50 + np.iinfo(np.int64).max) / 2
- assert result == expected
- @pytest.mark.xfail(not IS64, reason="GH 23440")
- @pytest.mark.parametrize(
- "left, right, expected",
- [
- ([-np.inf, 1.0], [1.0, 2.0], 0.0),
- ([-np.inf, -2.0], [-2.0, -1.0], -2.0),
- ([-2.0, -1.0], [-1.0, np.inf], 0.0),
- ([1.0, 2.0], [2.0, np.inf], 2.0),
- ],
- )
- def test_inf_bound_infinite_recursion(self, left, right, expected):
- # GH 46658
- tree = IntervalTree(left * 101, right * 101)
- result = tree.root.pivot
- assert result == expected
|