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- import copy
- import json
- import pytest
- import networkx as nx
- from networkx.readwrite.json_graph import cytoscape_data, cytoscape_graph
- def test_graph():
- G = nx.path_graph(4)
- H = cytoscape_graph(cytoscape_data(G))
- assert nx.is_isomorphic(G, H)
- def test_input_data_is_not_modified_when_building_graph():
- G = nx.path_graph(4)
- input_data = cytoscape_data(G)
- orig_data = copy.deepcopy(input_data)
- # Ensure input is unmodified by cytoscape_graph (gh-4173)
- cytoscape_graph(input_data)
- assert input_data == orig_data
- def test_graph_attributes():
- G = nx.path_graph(4)
- G.add_node(1, color="red")
- G.add_edge(1, 2, width=7)
- G.graph["foo"] = "bar"
- G.graph[1] = "one"
- G.add_node(3, name="node", id="123")
- H = cytoscape_graph(cytoscape_data(G))
- assert H.graph["foo"] == "bar"
- assert H.nodes[1]["color"] == "red"
- assert H[1][2]["width"] == 7
- assert H.nodes[3]["name"] == "node"
- assert H.nodes[3]["id"] == "123"
- d = json.dumps(cytoscape_data(G))
- H = cytoscape_graph(json.loads(d))
- assert H.graph["foo"] == "bar"
- assert H.graph[1] == "one"
- assert H.nodes[1]["color"] == "red"
- assert H[1][2]["width"] == 7
- assert H.nodes[3]["name"] == "node"
- assert H.nodes[3]["id"] == "123"
- def test_digraph():
- G = nx.DiGraph()
- nx.add_path(G, [1, 2, 3])
- H = cytoscape_graph(cytoscape_data(G))
- assert H.is_directed()
- assert nx.is_isomorphic(G, H)
- def test_multidigraph():
- G = nx.MultiDiGraph()
- nx.add_path(G, [1, 2, 3])
- H = cytoscape_graph(cytoscape_data(G))
- assert H.is_directed()
- assert H.is_multigraph()
- def test_multigraph():
- G = nx.MultiGraph()
- G.add_edge(1, 2, key="first")
- G.add_edge(1, 2, key="second", color="blue")
- H = cytoscape_graph(cytoscape_data(G))
- assert nx.is_isomorphic(G, H)
- assert H[1][2]["second"]["color"] == "blue"
- def test_exception():
- with pytest.raises(nx.NetworkXError):
- G = nx.MultiDiGraph()
- cytoscape_data(G, name="foo", ident="foo")
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