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- """Basic algorithms for depth-first searching the nodes of a graph."""
- from collections import defaultdict
- import networkx as nx
- __all__ = [
- "dfs_edges",
- "dfs_tree",
- "dfs_predecessors",
- "dfs_successors",
- "dfs_preorder_nodes",
- "dfs_postorder_nodes",
- "dfs_labeled_edges",
- ]
- def dfs_edges(G, source=None, depth_limit=None):
- """Iterate over edges in a depth-first-search (DFS).
- Perform a depth-first-search over the nodes of `G` and yield
- the edges in order. This may not generate all edges in `G`
- (see `~networkx.algorithms.traversal.edgedfs.edge_dfs`).
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search and yield edges in
- the component reachable from source.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Yields
- ------
- edge: 2-tuple of nodes
- Yields edges resulting from the depth-first-search.
- Examples
- --------
- >>> G = nx.path_graph(5)
- >>> list(nx.dfs_edges(G, source=0))
- [(0, 1), (1, 2), (2, 3), (3, 4)]
- >>> list(nx.dfs_edges(G, source=0, depth_limit=2))
- [(0, 1), (1, 2)]
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in PADS [1]_, with modifications
- to allow depth limits based on the Wikipedia article
- "Depth-limited search" [2]_.
- See Also
- --------
- dfs_preorder_nodes
- dfs_postorder_nodes
- dfs_labeled_edges
- :func:`~networkx.algorithms.traversal.edgedfs.edge_dfs`
- :func:`~networkx.algorithms.traversal.breadth_first_search.bfs_edges`
- References
- ----------
- .. [1] http://www.ics.uci.edu/~eppstein/PADS
- .. [2] https://en.wikipedia.org/wiki/Depth-limited_search
- """
- if source is None:
- # edges for all components
- nodes = G
- else:
- # edges for components with source
- nodes = [source]
- visited = set()
- if depth_limit is None:
- depth_limit = len(G)
- for start in nodes:
- if start in visited:
- continue
- visited.add(start)
- stack = [(start, depth_limit, iter(G[start]))]
- while stack:
- parent, depth_now, children = stack[-1]
- try:
- child = next(children)
- if child not in visited:
- yield parent, child
- visited.add(child)
- if depth_now > 1:
- stack.append((child, depth_now - 1, iter(G[child])))
- except StopIteration:
- stack.pop()
- def dfs_tree(G, source=None, depth_limit=None):
- """Returns oriented tree constructed from a depth-first-search from source.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- T : NetworkX DiGraph
- An oriented tree
- Examples
- --------
- >>> G = nx.path_graph(5)
- >>> T = nx.dfs_tree(G, source=0, depth_limit=2)
- >>> list(T.edges())
- [(0, 1), (1, 2)]
- >>> T = nx.dfs_tree(G, source=0)
- >>> list(T.edges())
- [(0, 1), (1, 2), (2, 3), (3, 4)]
- See Also
- --------
- dfs_preorder_nodes
- dfs_postorder_nodes
- dfs_labeled_edges
- edge_dfs
- bfs_tree
- """
- T = nx.DiGraph()
- if source is None:
- T.add_nodes_from(G)
- else:
- T.add_node(source)
- T.add_edges_from(dfs_edges(G, source, depth_limit))
- return T
- def dfs_predecessors(G, source=None, depth_limit=None):
- """Returns dictionary of predecessors in depth-first-search from source.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- pred: dict
- A dictionary with nodes as keys and predecessor nodes as values.
- Examples
- --------
- >>> G = nx.path_graph(4)
- >>> nx.dfs_predecessors(G, source=0)
- {1: 0, 2: 1, 3: 2}
- >>> nx.dfs_predecessors(G, source=0, depth_limit=2)
- {1: 0, 2: 1}
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in `PADS`_, with modifications
- to allow depth limits based on the Wikipedia article
- "`Depth-limited search`_".
- .. _PADS: http://www.ics.uci.edu/~eppstein/PADS
- .. _Depth-limited search: https://en.wikipedia.org/wiki/Depth-limited_search
- See Also
- --------
- dfs_preorder_nodes
- dfs_postorder_nodes
- dfs_labeled_edges
- edge_dfs
- bfs_tree
- """
- return {t: s for s, t in dfs_edges(G, source, depth_limit)}
- def dfs_successors(G, source=None, depth_limit=None):
- """Returns dictionary of successors in depth-first-search from source.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- succ: dict
- A dictionary with nodes as keys and list of successor nodes as values.
- Examples
- --------
- >>> G = nx.path_graph(5)
- >>> nx.dfs_successors(G, source=0)
- {0: [1], 1: [2], 2: [3], 3: [4]}
- >>> nx.dfs_successors(G, source=0, depth_limit=2)
- {0: [1], 1: [2]}
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in `PADS`_, with modifications
- to allow depth limits based on the Wikipedia article
- "`Depth-limited search`_".
- .. _PADS: http://www.ics.uci.edu/~eppstein/PADS
- .. _Depth-limited search: https://en.wikipedia.org/wiki/Depth-limited_search
- See Also
- --------
- dfs_preorder_nodes
- dfs_postorder_nodes
- dfs_labeled_edges
- edge_dfs
- bfs_tree
- """
- d = defaultdict(list)
- for s, t in dfs_edges(G, source=source, depth_limit=depth_limit):
- d[s].append(t)
- return dict(d)
- def dfs_postorder_nodes(G, source=None, depth_limit=None):
- """Generate nodes in a depth-first-search post-ordering starting at source.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- nodes: generator
- A generator of nodes in a depth-first-search post-ordering.
- Examples
- --------
- >>> G = nx.path_graph(5)
- >>> list(nx.dfs_postorder_nodes(G, source=0))
- [4, 3, 2, 1, 0]
- >>> list(nx.dfs_postorder_nodes(G, source=0, depth_limit=2))
- [1, 0]
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in `PADS`_, with modifications
- to allow depth limits based on the Wikipedia article
- "`Depth-limited search`_".
- .. _PADS: http://www.ics.uci.edu/~eppstein/PADS
- .. _Depth-limited search: https://en.wikipedia.org/wiki/Depth-limited_search
- See Also
- --------
- dfs_edges
- dfs_preorder_nodes
- dfs_labeled_edges
- edge_dfs
- bfs_tree
- """
- edges = nx.dfs_labeled_edges(G, source=source, depth_limit=depth_limit)
- return (v for u, v, d in edges if d == "reverse")
- def dfs_preorder_nodes(G, source=None, depth_limit=None):
- """Generate nodes in a depth-first-search pre-ordering starting at source.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search and return nodes in
- the component reachable from source.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- nodes: generator
- A generator of nodes in a depth-first-search pre-ordering.
- Examples
- --------
- >>> G = nx.path_graph(5)
- >>> list(nx.dfs_preorder_nodes(G, source=0))
- [0, 1, 2, 3, 4]
- >>> list(nx.dfs_preorder_nodes(G, source=0, depth_limit=2))
- [0, 1, 2]
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in `PADS`_, with modifications
- to allow depth limits based on the Wikipedia article
- "`Depth-limited search`_".
- .. _PADS: http://www.ics.uci.edu/~eppstein/PADS
- .. _Depth-limited search: https://en.wikipedia.org/wiki/Depth-limited_search
- See Also
- --------
- dfs_edges
- dfs_postorder_nodes
- dfs_labeled_edges
- bfs_edges
- """
- edges = nx.dfs_labeled_edges(G, source=source, depth_limit=depth_limit)
- return (v for u, v, d in edges if d == "forward")
- def dfs_labeled_edges(G, source=None, depth_limit=None):
- """Iterate over edges in a depth-first-search (DFS) labeled by type.
- Parameters
- ----------
- G : NetworkX graph
- source : node, optional
- Specify starting node for depth-first search and return edges in
- the component reachable from source.
- depth_limit : int, optional (default=len(G))
- Specify the maximum search depth.
- Returns
- -------
- edges: generator
- A generator of triples of the form (*u*, *v*, *d*), where (*u*,
- *v*) is the edge being explored in the depth-first search and *d*
- is one of the strings 'forward', 'nontree', 'reverse', or 'reverse-depth_limit'.
- A 'forward' edge is one in which *u* has been visited but *v* has
- not. A 'nontree' edge is one in which both *u* and *v* have been
- visited but the edge is not in the DFS tree. A 'reverse' edge is
- one in which both *u* and *v* have been visited and the edge is in
- the DFS tree. When the `depth_limit` is reached via a 'forward' edge,
- a 'reverse' edge is immediately generated rather than the subtree
- being explored. To indicate this flavor of 'reverse' edge, the string
- yielded is 'reverse-depth_limit'.
- Examples
- --------
- The labels reveal the complete transcript of the depth-first search
- algorithm in more detail than, for example, :func:`dfs_edges`::
- >>> from pprint import pprint
- >>>
- >>> G = nx.DiGraph([(0, 1), (1, 2), (2, 1)])
- >>> pprint(list(nx.dfs_labeled_edges(G, source=0)))
- [(0, 0, 'forward'),
- (0, 1, 'forward'),
- (1, 2, 'forward'),
- (2, 1, 'nontree'),
- (1, 2, 'reverse'),
- (0, 1, 'reverse'),
- (0, 0, 'reverse')]
- Notes
- -----
- If a source is not specified then a source is chosen arbitrarily and
- repeatedly until all components in the graph are searched.
- The implementation of this function is adapted from David Eppstein's
- depth-first search function in `PADS`_, with modifications
- to allow depth limits based on the Wikipedia article
- "`Depth-limited search`_".
- .. _PADS: http://www.ics.uci.edu/~eppstein/PADS
- .. _Depth-limited search: https://en.wikipedia.org/wiki/Depth-limited_search
- See Also
- --------
- dfs_edges
- dfs_preorder_nodes
- dfs_postorder_nodes
- """
- # Based on http://www.ics.uci.edu/~eppstein/PADS/DFS.py
- # by D. Eppstein, July 2004.
- if source is None:
- # edges for all components
- nodes = G
- else:
- # edges for components with source
- nodes = [source]
- visited = set()
- if depth_limit is None:
- depth_limit = len(G)
- for start in nodes:
- if start in visited:
- continue
- yield start, start, "forward"
- visited.add(start)
- stack = [(start, depth_limit, iter(G[start]))]
- while stack:
- parent, depth_now, children = stack[-1]
- try:
- child = next(children)
- if child in visited:
- yield parent, child, "nontree"
- else:
- yield parent, child, "forward"
- visited.add(child)
- if depth_now > 1:
- stack.append((child, depth_now - 1, iter(G[child])))
- else:
- yield parent, child, "reverse-depth_limit"
- except StopIteration:
- stack.pop()
- if stack:
- yield stack[-1][0], parent, "reverse"
- yield start, start, "reverse"
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