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- // Copyright 2004, 2005 The Trustees of Indiana University.
- // Distributed under the Boost Software License, Version 1.0.
- // (See accompanying file LICENSE_1_0.txt or copy at
- // http://www.boost.org/LICENSE_1_0.txt)
- // Authors: Douglas Gregor
- // Andrew Lumsdaine
- #ifndef BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
- #define BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
- #include <boost/config/no_tr1/cmath.hpp>
- #include <boost/graph/graph_traits.hpp>
- #include <boost/graph/named_function_params.hpp>
- #include <boost/graph/iteration_macros.hpp>
- #include <boost/graph/topology.hpp> // For topology concepts
- #include <boost/graph/detail/mpi_include.hpp>
- #include <vector>
- #include <list>
- #include <algorithm> // for std::min and std::max
- #include <numeric> // for std::accumulate
- #include <cmath> // for std::sqrt and std::fabs
- #include <functional>
- namespace boost
- {
- struct square_distance_attractive_force
- {
- template < typename Graph, typename T >
- T operator()(typename graph_traits< Graph >::edge_descriptor, T k, T d,
- const Graph&) const
- {
- return d * d / k;
- }
- };
- struct square_distance_repulsive_force
- {
- template < typename Graph, typename T >
- T operator()(typename graph_traits< Graph >::vertex_descriptor,
- typename graph_traits< Graph >::vertex_descriptor, T k, T d,
- const Graph&) const
- {
- return k * k / d;
- }
- };
- template < typename T > struct linear_cooling
- {
- typedef T result_type;
- linear_cooling(std::size_t iterations)
- : temp(T(iterations) / T(10)), step(0.1)
- {
- }
- linear_cooling(std::size_t iterations, T temp)
- : temp(temp), step(temp / T(iterations))
- {
- }
- T operator()()
- {
- T old_temp = temp;
- temp -= step;
- if (temp < T(0))
- temp = T(0);
- return old_temp;
- }
- private:
- T temp;
- T step;
- };
- struct all_force_pairs
- {
- template < typename Graph, typename ApplyForce >
- void operator()(const Graph& g, ApplyForce apply_force)
- {
- typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
- vertex_iterator v, end;
- for (boost::tie(v, end) = vertices(g); v != end; ++v)
- {
- vertex_iterator u = v;
- for (++u; u != end; ++u)
- {
- apply_force(*u, *v);
- apply_force(*v, *u);
- }
- }
- }
- };
- template < typename Topology, typename PositionMap > struct grid_force_pairs
- {
- typedef typename property_traits< PositionMap >::value_type Point;
- BOOST_STATIC_ASSERT(Point::dimensions == 2);
- typedef typename Topology::point_difference_type point_difference_type;
- template < typename Graph >
- explicit grid_force_pairs(
- const Topology& topology, PositionMap position, const Graph& g)
- : topology(topology), position(position)
- {
- two_k = 2. * this->topology.volume(this->topology.extent())
- / std::sqrt((double)num_vertices(g));
- }
- template < typename Graph, typename ApplyForce >
- void operator()(const Graph& g, ApplyForce apply_force)
- {
- typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
- typedef
- typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
- typedef std::list< vertex_descriptor > bucket_t;
- typedef std::vector< bucket_t > buckets_t;
- std::size_t columns = std::size_t(topology.extent()[0] / two_k + 1.);
- std::size_t rows = std::size_t(topology.extent()[1] / two_k + 1.);
- buckets_t buckets(rows * columns);
- vertex_iterator v, v_end;
- for (boost::tie(v, v_end) = vertices(g); v != v_end; ++v)
- {
- std::size_t column = std::size_t(
- (get(position, *v)[0] + topology.extent()[0] / 2) / two_k);
- std::size_t row = std::size_t(
- (get(position, *v)[1] + topology.extent()[1] / 2) / two_k);
- if (column >= columns)
- column = columns - 1;
- if (row >= rows)
- row = rows - 1;
- buckets[row * columns + column].push_back(*v);
- }
- for (std::size_t row = 0; row < rows; ++row)
- for (std::size_t column = 0; column < columns; ++column)
- {
- bucket_t& bucket = buckets[row * columns + column];
- typedef typename bucket_t::iterator bucket_iterator;
- for (bucket_iterator u = bucket.begin(); u != bucket.end(); ++u)
- {
- // Repulse vertices in this bucket
- bucket_iterator v = u;
- for (++v; v != bucket.end(); ++v)
- {
- apply_force(*u, *v);
- apply_force(*v, *u);
- }
- std::size_t adj_start_row = row == 0 ? 0 : row - 1;
- std::size_t adj_end_row = row == rows - 1 ? row : row + 1;
- std::size_t adj_start_column = column == 0 ? 0 : column - 1;
- std::size_t adj_end_column
- = column == columns - 1 ? column : column + 1;
- for (std::size_t other_row = adj_start_row;
- other_row <= adj_end_row; ++other_row)
- for (std::size_t other_column = adj_start_column;
- other_column <= adj_end_column; ++other_column)
- if (other_row != row || other_column != column)
- {
- // Repulse vertices in this bucket
- bucket_t& other_bucket
- = buckets[other_row * columns
- + other_column];
- for (v = other_bucket.begin();
- v != other_bucket.end(); ++v)
- {
- double dist = topology.distance(
- get(position, *u), get(position, *v));
- if (dist < two_k)
- apply_force(*u, *v);
- }
- }
- }
- }
- }
- private:
- const Topology& topology;
- PositionMap position;
- double two_k;
- };
- template < typename PositionMap, typename Topology, typename Graph >
- inline grid_force_pairs< Topology, PositionMap > make_grid_force_pairs(
- const Topology& topology, const PositionMap& position, const Graph& g)
- {
- return grid_force_pairs< Topology, PositionMap >(topology, position, g);
- }
- template < typename Graph, typename PositionMap, typename Topology >
- void scale_graph(const Graph& g, PositionMap position, const Topology& topology,
- typename Topology::point_type upper_left,
- typename Topology::point_type lower_right)
- {
- if (num_vertices(g) == 0)
- return;
- typedef typename Topology::point_type Point;
- typedef typename Topology::point_difference_type point_difference_type;
- // Find min/max ranges
- Point min_point = get(position, *vertices(g).first), max_point = min_point;
- BGL_FORALL_VERTICES_T(v, g, Graph)
- {
- min_point = topology.pointwise_min(min_point, get(position, v));
- max_point = topology.pointwise_max(max_point, get(position, v));
- }
- Point old_origin = topology.move_position_toward(min_point, 0.5, max_point);
- Point new_origin
- = topology.move_position_toward(upper_left, 0.5, lower_right);
- point_difference_type old_size = topology.difference(max_point, min_point);
- point_difference_type new_size
- = topology.difference(lower_right, upper_left);
- // Scale to bounding box provided
- BGL_FORALL_VERTICES_T(v, g, Graph)
- {
- point_difference_type relative_loc
- = topology.difference(get(position, v), old_origin);
- relative_loc = (relative_loc / old_size) * new_size;
- put(position, v, topology.adjust(new_origin, relative_loc));
- }
- }
- namespace detail
- {
- template < typename Topology, typename PropMap, typename Vertex >
- void maybe_jitter_point(const Topology& topology, const PropMap& pm,
- Vertex v, const typename Topology::point_type& p2)
- {
- double too_close = topology.norm(topology.extent()) / 10000.;
- if (topology.distance(get(pm, v), p2) < too_close)
- {
- put(pm, v,
- topology.move_position_toward(
- get(pm, v), 1. / 200, topology.random_point()));
- }
- }
- template < typename Topology, typename PositionMap,
- typename DisplacementMap, typename RepulsiveForce, typename Graph >
- struct fr_apply_force
- {
- typedef
- typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
- typedef typename Topology::point_type Point;
- typedef typename Topology::point_difference_type PointDiff;
- fr_apply_force(const Topology& topology, const PositionMap& position,
- const DisplacementMap& displacement, RepulsiveForce repulsive_force,
- double k, const Graph& g)
- : topology(topology)
- , position(position)
- , displacement(displacement)
- , repulsive_force(repulsive_force)
- , k(k)
- , g(g)
- {
- }
- void operator()(vertex_descriptor u, vertex_descriptor v)
- {
- if (u != v)
- {
- // When the vertices land on top of each other, move the
- // first vertex away from the boundaries.
- maybe_jitter_point(topology, position, u, get(position, v));
- double dist
- = topology.distance(get(position, u), get(position, v));
- typename Topology::point_difference_type dispv
- = get(displacement, v);
- if (dist == 0.)
- {
- for (std::size_t i = 0; i < Point::dimensions; ++i)
- {
- dispv[i] += 0.01;
- }
- }
- else
- {
- double fr = repulsive_force(u, v, k, dist, g);
- dispv += (fr / dist)
- * topology.difference(
- get(position, v), get(position, u));
- }
- put(displacement, v, dispv);
- }
- }
- private:
- const Topology& topology;
- PositionMap position;
- DisplacementMap displacement;
- RepulsiveForce repulsive_force;
- double k;
- const Graph& g;
- };
- } // end namespace detail
- template < typename Topology, typename Graph, typename PositionMap,
- typename AttractiveForce, typename RepulsiveForce, typename ForcePairs,
- typename Cooling, typename DisplacementMap >
- void fruchterman_reingold_force_directed_layout(const Graph& g,
- PositionMap position, const Topology& topology,
- AttractiveForce attractive_force, RepulsiveForce repulsive_force,
- ForcePairs force_pairs, Cooling cool, DisplacementMap displacement)
- {
- typedef typename graph_traits< Graph >::vertex_iterator vertex_iterator;
- typedef typename graph_traits< Graph >::vertex_descriptor vertex_descriptor;
- typedef typename graph_traits< Graph >::edge_iterator edge_iterator;
- double volume = topology.volume(topology.extent());
- // assume positions are initialized randomly
- double k = pow(volume / num_vertices(g),
- 1. / (double)(Topology::point_difference_type::dimensions));
- detail::fr_apply_force< Topology, PositionMap, DisplacementMap,
- RepulsiveForce, Graph >
- apply_force(topology, position, displacement, repulsive_force, k, g);
- do
- {
- // Calculate repulsive forces
- vertex_iterator v, v_end;
- for (boost::tie(v, v_end) = vertices(g); v != v_end; ++v)
- put(displacement, *v, typename Topology::point_difference_type());
- force_pairs(g, apply_force);
- // Calculate attractive forces
- edge_iterator e, e_end;
- for (boost::tie(e, e_end) = edges(g); e != e_end; ++e)
- {
- vertex_descriptor v = source(*e, g);
- vertex_descriptor u = target(*e, g);
- // When the vertices land on top of each other, move the
- // first vertex away from the boundaries.
- ::boost::detail::maybe_jitter_point(
- topology, position, u, get(position, v));
- typename Topology::point_difference_type delta
- = topology.difference(get(position, v), get(position, u));
- double dist = topology.distance(get(position, u), get(position, v));
- double fa = attractive_force(*e, k, dist, g);
- put(displacement, v, get(displacement, v) - (fa / dist) * delta);
- put(displacement, u, get(displacement, u) + (fa / dist) * delta);
- }
- if (double temp = cool())
- {
- // Update positions
- BGL_FORALL_VERTICES_T(v, g, Graph)
- {
- BOOST_USING_STD_MIN();
- BOOST_USING_STD_MAX();
- double disp_size = topology.norm(get(displacement, v));
- put(position, v,
- topology.adjust(get(position, v),
- get(displacement, v)
- * (min BOOST_PREVENT_MACRO_SUBSTITUTION(
- disp_size, temp)
- / disp_size)));
- put(position, v, topology.bound(get(position, v)));
- }
- }
- else
- {
- break;
- }
- } while (true);
- }
- namespace detail
- {
- template < typename DisplacementMap > struct fr_force_directed_layout
- {
- template < typename Topology, typename Graph, typename PositionMap,
- typename AttractiveForce, typename RepulsiveForce,
- typename ForcePairs, typename Cooling, typename Param, typename Tag,
- typename Rest >
- static void run(const Graph& g, PositionMap position,
- const Topology& topology, AttractiveForce attractive_force,
- RepulsiveForce repulsive_force, ForcePairs force_pairs,
- Cooling cool, DisplacementMap displacement,
- const bgl_named_params< Param, Tag, Rest >&)
- {
- fruchterman_reingold_force_directed_layout(g, position, topology,
- attractive_force, repulsive_force, force_pairs, cool,
- displacement);
- }
- };
- template <> struct fr_force_directed_layout< param_not_found >
- {
- template < typename Topology, typename Graph, typename PositionMap,
- typename AttractiveForce, typename RepulsiveForce,
- typename ForcePairs, typename Cooling, typename Param, typename Tag,
- typename Rest >
- static void run(const Graph& g, PositionMap position,
- const Topology& topology, AttractiveForce attractive_force,
- RepulsiveForce repulsive_force, ForcePairs force_pairs,
- Cooling cool, param_not_found,
- const bgl_named_params< Param, Tag, Rest >& params)
- {
- typedef typename Topology::point_difference_type PointDiff;
- std::vector< PointDiff > displacements(num_vertices(g));
- fruchterman_reingold_force_directed_layout(g, position, topology,
- attractive_force, repulsive_force, force_pairs, cool,
- make_iterator_property_map(displacements.begin(),
- choose_const_pmap(
- get_param(params, vertex_index), g, vertex_index),
- PointDiff()));
- }
- };
- } // end namespace detail
- template < typename Topology, typename Graph, typename PositionMap,
- typename Param, typename Tag, typename Rest >
- void fruchterman_reingold_force_directed_layout(const Graph& g,
- PositionMap position, const Topology& topology,
- const bgl_named_params< Param, Tag, Rest >& params)
- {
- typedef typename get_param_type< vertex_displacement_t,
- bgl_named_params< Param, Tag, Rest > >::type D;
- detail::fr_force_directed_layout< D >::run(g, position, topology,
- choose_param(get_param(params, attractive_force_t()),
- square_distance_attractive_force()),
- choose_param(get_param(params, repulsive_force_t()),
- square_distance_repulsive_force()),
- choose_param(get_param(params, force_pairs_t()),
- make_grid_force_pairs(topology, position, g)),
- choose_param(
- get_param(params, cooling_t()), linear_cooling< double >(100)),
- get_param(params, vertex_displacement_t()), params);
- }
- template < typename Topology, typename Graph, typename PositionMap >
- void fruchterman_reingold_force_directed_layout(
- const Graph& g, PositionMap position, const Topology& topology)
- {
- fruchterman_reingold_force_directed_layout(g, position, topology,
- attractive_force(square_distance_attractive_force()));
- }
- } // end namespace boost
- #include BOOST_GRAPH_MPI_INCLUDE(< boost / graph / distributed / fruchterman_reingold.hpp >)
- #endif // BOOST_GRAPH_FRUCHTERMAN_REINGOLD_FORCE_DIRECTED_LAYOUT_HPP
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