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- ///////////////////////////////////////////////////////////////////////////////
- // covariance.hpp
- //
- // Copyright 2006 Daniel Egloff, Olivier Gygi. Distributed under the Boost
- // Software License, Version 1.0. (See accompanying file
- // LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
- #ifndef BOOST_ACCUMULATORS_STATISTICS_COVARIANCE_HPP_DE_01_01_2006
- #define BOOST_ACCUMULATORS_STATISTICS_COVARIANCE_HPP_DE_01_01_2006
- #include <vector>
- #include <limits>
- #include <numeric>
- #include <functional>
- #include <complex>
- #include <boost/mpl/assert.hpp>
- #include <boost/mpl/bool.hpp>
- #include <boost/range.hpp>
- #include <boost/parameter/keyword.hpp>
- #include <boost/mpl/placeholders.hpp>
- #include <boost/numeric/ublas/io.hpp>
- #include <boost/numeric/ublas/matrix.hpp>
- #include <boost/type_traits/is_scalar.hpp>
- #include <boost/type_traits/is_same.hpp>
- #include <boost/accumulators/framework/accumulator_base.hpp>
- #include <boost/accumulators/framework/extractor.hpp>
- #include <boost/accumulators/numeric/functional.hpp>
- #include <boost/accumulators/framework/parameters/sample.hpp>
- #include <boost/accumulators/statistics_fwd.hpp>
- #include <boost/accumulators/statistics/count.hpp>
- #include <boost/accumulators/statistics/mean.hpp>
- namespace boost { namespace numeric
- {
- namespace functional
- {
- struct std_vector_tag;
- ///////////////////////////////////////////////////////////////////////////////
- // functional::outer_product
- template<typename Left, typename Right, typename EnableIf = void>
- struct outer_product_base
- : functional::multiplies<Left, Right>
- {};
- template<typename Left, typename Right, typename LeftTag = typename tag<Left>::type, typename RightTag = typename tag<Right>::type>
- struct outer_product
- : outer_product_base<Left, Right, void>
- {};
- template<typename Left, typename Right>
- struct outer_product<Left, Right, std_vector_tag, std_vector_tag>
- {
- typedef Left first_argument_type;
- typedef Right second_argument_type;
- typedef
- ublas::matrix<
- typename functional::multiplies<
- typename Left::value_type
- , typename Right::value_type
- >::result_type
- >
- result_type;
- result_type
- operator ()(Left & left, Right & right) const
- {
- std::size_t left_size = left.size();
- std::size_t right_size = right.size();
- result_type result(left_size, right_size);
- for (std::size_t i = 0; i < left_size; ++i)
- for (std::size_t j = 0; j < right_size; ++j)
- result(i,j) = numeric::multiplies(left[i], right[j]);
- return result;
- }
- };
- }
- namespace op
- {
- struct outer_product
- : boost::detail::function2<functional::outer_product<_1, _2, functional::tag<_1>, functional::tag<_2> > >
- {};
- }
- namespace
- {
- op::outer_product const &outer_product = boost::detail::pod_singleton<op::outer_product>::instance;
- }
- }}
- namespace boost { namespace accumulators
- {
- namespace impl
- {
- ///////////////////////////////////////////////////////////////////////////////
- // covariance_impl
- //
- /**
- @brief Covariance Estimator
- An iterative Monte Carlo estimator for the covariance \f$\mathrm{Cov}(X,X')\f$, where \f$X\f$ is a sample
- and \f$X'\f$ is a variate, is given by:
- \f[
- \hat{c}_n = \frac{n-1}{n} \hat{c}_{n-1} + \frac{1}{n-1}(X_n - \hat{\mu}_n)(X_n' - \hat{\mu}_n'),\quad n\ge2,\quad\hat{c}_1 = 0,
- \f]
- \f$\hat{\mu}_n\f$ and \f$\hat{\mu}_n'\f$ being the means of the samples and variates.
- */
- template<typename Sample, typename VariateType, typename VariateTag>
- struct covariance_impl
- : accumulator_base
- {
- typedef typename numeric::functional::fdiv<Sample, std::size_t>::result_type sample_type;
- typedef typename numeric::functional::fdiv<VariateType, std::size_t>::result_type variate_type;
- // for boost::result_of
- typedef typename numeric::functional::outer_product<sample_type, variate_type>::result_type result_type;
- template<typename Args>
- covariance_impl(Args const &args)
- : cov_(
- numeric::outer_product(
- numeric::fdiv(args[sample | Sample()], (std::size_t)1)
- , numeric::fdiv(args[parameter::keyword<VariateTag>::get() | VariateType()], (std::size_t)1)
- )
- )
- {
- }
- template<typename Args>
- void operator ()(Args const &args)
- {
- std::size_t cnt = count(args);
- if (cnt > 1)
- {
- extractor<tag::mean_of_variates<VariateType, VariateTag> > const some_mean_of_variates = {};
- this->cov_ = this->cov_*(cnt-1.)/cnt
- + numeric::outer_product(
- some_mean_of_variates(args) - args[parameter::keyword<VariateTag>::get()]
- , mean(args) - args[sample]
- ) / (cnt-1.);
- }
- }
- result_type result(dont_care) const
- {
- return this->cov_;
- }
- // make this accumulator serializeable
- template<class Archive>
- void serialize(Archive & ar, const unsigned int file_version)
- {
- ar & cov_;
- }
- private:
- result_type cov_;
- };
- } // namespace impl
- ///////////////////////////////////////////////////////////////////////////////
- // tag::covariance
- //
- namespace tag
- {
- template<typename VariateType, typename VariateTag>
- struct covariance
- : depends_on<count, mean, mean_of_variates<VariateType, VariateTag> >
- {
- typedef accumulators::impl::covariance_impl<mpl::_1, VariateType, VariateTag> impl;
- };
- struct abstract_covariance
- : depends_on<>
- {
- };
- }
- ///////////////////////////////////////////////////////////////////////////////
- // extract::covariance
- //
- namespace extract
- {
- extractor<tag::abstract_covariance> const covariance = {};
- BOOST_ACCUMULATORS_IGNORE_GLOBAL(covariance)
- }
- using extract::covariance;
- template<typename VariateType, typename VariateTag>
- struct feature_of<tag::covariance<VariateType, VariateTag> >
- : feature_of<tag::abstract_covariance>
- {
- };
- // So that covariance can be automatically substituted with
- // weighted_covariance when the weight parameter is non-void.
- template<typename VariateType, typename VariateTag>
- struct as_weighted_feature<tag::covariance<VariateType, VariateTag> >
- {
- typedef tag::weighted_covariance<VariateType, VariateTag> type;
- };
- template<typename VariateType, typename VariateTag>
- struct feature_of<tag::weighted_covariance<VariateType, VariateTag> >
- : feature_of<tag::covariance<VariateType, VariateTag> >
- {};
- }} // namespace boost::accumulators
- #endif
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